Difference between revisions of "Maeda Lab:Protocols"
From Maeda Lab
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**[http://www.ch.embnet.org/software/BOX_form.html BoxShade] | **[http://www.ch.embnet.org/software/BOX_form.html BoxShade] | ||
***Select "RTF_new" and "ALN" | ***Select "RTF_new" and "ALN" | ||
| + | **[http://prodata.swmed.edu/promals3d/promals3d.php PROMALS3D], structure-guided phylogenetic analysis | ||
| + | ***Choose fasta output format in PROMALS3D | ||
| + | ***Select all the text and save as a .txt file. | ||
| + | ***In [http://www.megasoftware.net MEGA] go to File and select "convert file format to mega file". | ||
| + | ***Select the .txt file and specify fasta format. A new window will pop up to save as a new mega file. | ||
| + | ***Close out of this | ||
| + | ***Go to File, "open file/session", open the newly created mega file. | ||
| + | ***Run phylogenetic analyses. | ||
**[http://www.bioinformatics.org/sms/rev_comp.html Reverse Complement] | **[http://www.bioinformatics.org/sms/rev_comp.html Reverse Complement] | ||
**[http://searchlauncher.bcm.tmc.edu/seq-util/Options/readseq.html Convert Sequence Format] | **[http://searchlauncher.bcm.tmc.edu/seq-util/Options/readseq.html Convert Sequence Format] | ||
Revision as of 09:11, 3 September 2017
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